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    Single hybrid motif superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841699, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Single hybrid motif superfamily protein
    Primary source
    TAIR:AT1G52670
    Locus tag
    AT1G52670
    See related
    Araport:AT1G52670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6D8.11; F6D8_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (19614931..19617611, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI superfamily protein Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene late embryogenesis abundant protein-related / LEA protein-like protein Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Family of Negative Regulators Targets the Committed Step of de Novo Fatty Acid Biosynthesis. Salie MJ, et al. Plant Cell, 2016 Sep. PMID 27559025, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_104145.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within fatty acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Single hybrid motif superfamily protein
    NP_564612.1
    • Single hybrid motif superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2); Has 3136 Blast hits to 3136 proteins in 1282 species: Archae - 2; Bacteria - 2438; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19614931..19617611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104145.4 → NP_564612.1  Single hybrid motif superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564612.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEY5, Q8VZ68, Q9SSR9
      Conserved Domains (1) summary
      PLN02983
      Location:36 → 265
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
    Nucleotide Protein
    Heading Accession and Version

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