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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841417, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G49940
    Locus tag
    AT1G49940
    See related
    Araport:AT1G49940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J10.17; F2J10_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (18488127..18491769, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MuDR family transposase Neighboring gene alanine-tRNA ligase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene telomere repeat binding factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001154416.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001319185.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1).
    NP_175416.1
    • BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18488127..18491769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333405.1 → NP_001319185.1  uncharacterized protein AT1G49940 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EIT4, F4I3G1

    2. NM_001160944.2 → NP_001154416.1  uncharacterized protein AT1G49940 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154416.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I3F9

    3. NM_001333406.1 → NP_001320465.1  uncharacterized protein AT1G49940 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMV8

    4. NM_001198256.2 → NP_001185185.1  uncharacterized protein AT1G49940 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185185.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EIT4, F4I3G1

    5. NM_103881.2 → NP_175416.1  uncharacterized protein AT1G49940 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175416.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EIT4, F4I3G0
    Nucleotide Protein
    Heading Accession and Version

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