U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CLE3 CLAVATA3/ESR-RELATED 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837132, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CLE3
    Official Full Name
    CLAVATA3/ESR-RELATED 3
    Primary source
    TAIR:AT1G06225
    Locus tag
    AT1G06225
    See related
    Araport:AT1G06225
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLAVATA3/ESR-RELATED 3
    Summary
    Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CLE3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (1905918..1906298)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ENTH/VHS/GAT family protein Neighboring gene Ribosomal protein S5/Elongation factor G/III/V family protein Neighboring gene global transcription factor group E4 Neighboring gene diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455) Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana. Nakagami S, et al. Plant J, 2023 Mar. PMID 36628476
    2. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
    3. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana.
      Title: CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables receptor serine/threonine kinase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell-cell signaling involved in cell fate commitment ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in apoplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CLAVATA3/ESR-RELATED 3
    NP_563763.1
    • CLAVATA3/ESR-RELATED 3 (CLE3); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 4 (TAIR:AT2G31081.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1905918..1906298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100504.2 → NP_563763.1  CLAVATA3/ESR-RELATED 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563763.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0ME59, Q3EDH8
      UniProtKB/TrEMBL
      A0A178WPP4, A0A5S9SWI8, A0A7G2DS84
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EDH8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools