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    RECQI1 RECQ helicase l1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819743, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RECQI1
    Official Full Name
    RECQ helicase l1
    Primary source
    TAIR:AT3G05740
    Locus tag
    AT3G05740
    See related
    Araport:AT3G05740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18C1.21; RECQ helicase l1
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    Genomic context

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    See RECQI1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (1698079..1701467)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family Neighboring gene ncRNA Neighboring gene defensin-like protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene uncharacterized protein Neighboring gene serine-rich adhesin for platelets-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant. Bagherieh-Najjar MB, et al. Plant Mol Biol, 2003 May. PMID 12856935
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001337605.1
    NM_111448.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cellular response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RECQ helicase l1
    NP_187225.2
    • RECQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 22913 Blast hits to 22836 proteins in 2673 species: Archae - 358; Bacteria - 13443; Metazoa - 2936; Fungi - 2132; Plants - 1261; Viruses - 9; Other Eukaryotes - 2774 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1698079..1701467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111448.3 → NP_187225.2  RECQ helicase l1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187225.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT74, Q9M9M2
      UniProtKB/TrEMBL
      A0A5S9X9G1, A0A7G2EMI4
      Conserved Domains (1) summary
      TIGR00614
      Location:202 → 603
      recQ_fam; ATP-dependent DNA helicase, RecQ family

    2. NM_001337605.1 → NP_001327100.1  RECQ helicase l1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR97, A0A5S9X9G1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT74.1

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