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    myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820490, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myb-like HTH transcriptional regulator family protein
    Primary source
    TAIR:AT3G13040
    Locus tag
    AT3G13040
    See related
    Araport:AT3G13040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGH6.22
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (4172137..4175457, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hAT transposon superfamily protein Neighboring gene hAT transposon superfamily protein Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The transcription factor γMYB2 acts as a negative regulator of secondary cell wall thickening in anther and stem. Nguyen HTK, et al. Gene, 2019 Jun 20. PMID 30930225
    2. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Nguyen HT, et al. Plant Cell Physiol, 2016 Apr. PMID 26872838
    3. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article
    4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results demonstrate that gammaMYB2 acts as a repressor that modulates secondary cell wall thickening in the primary stem and anther in Arabidopsis. [gammaMYB2]
      Title: The transcription factor γMYB2 acts as a negative regulator of secondary cell wall thickening in anther and stem.
    2. At3g13040 directly interacted with At2g20400 (gammaMYB1) and enhanced its activation.
      Title: A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338022.1
    NM_112141.3
    NM_202569.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb-like HTH transcriptional regulator family protein
    NP_001319536.1
    • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: phosphate starvation response 1 (TAIR:AT4G28610.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566442.1
    • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: phosphate starvation response 1 (TAIR:AT4G28610.1); Has 2193 Blast hits to 2140 proteins in 145 species: Archae - 2; Bacteria - 18; Metazoa - 253; Fungi - 37; Plants - 1676; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4172137..4175457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112141.3 → NP_566442.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566442.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFN4, Q949U2, Q9LSH8
      UniProtKB/TrEMBL
      A0A178VHF6, A0A5S9XBM3, A0A654F8A1
      Conserved Domains (3) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      PLN03162
      Location:106 → 294
      PLN03162; golden-2 like transcription factor; Provisional
      pfam14379
      Location:332 → 378
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. NM_202569.1 → NP_974298.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974298.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFN4, Q949U2, Q9LSH8
      UniProtKB/TrEMBL
      A0A178VHF6, A0A5S9XBM3, A0A654F8A1
      Conserved Domains (3) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      PLN03162
      Location:106 → 294
      PLN03162; golden-2 like transcription factor; Provisional
      pfam14379
      Location:332 → 378
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    3. NM_001338022.1 → NP_001319536.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFN4, Q949U2, Q9LSH8
      UniProtKB/TrEMBL
      A0A178VHF6, A0A5S9XBM3, A0A654F8A1
      Conserved Domains (3) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      PLN03162
      Location:106 → 294
      PLN03162; golden-2 like transcription factor; Provisional
      pfam14379
      Location:332 → 378
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q949U2.1

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