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    extracellular ligand-gated ion channel protein (DUF3537) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821574, updated on 18-Sep-2024

    Summary

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    Official Full Name
    extracellular ligand-gated ion channel protein (DUF3537)
    Primary source
    TAIR:AT3G20300
    Locus tag
    AT3G20300
    See related
    Araport:AT3G20300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (7079492..7082178, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene EPS15 homology domain 1 Neighboring gene ethylene response factor 7 Neighboring gene trigalactosyldiacylglycerol2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112921.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    extracellular ligand-gated ion channel protein (DUF3537)
    NP_566658.1
    • Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7079492..7082178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112921.4 → NP_566658.1  extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566658.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V507, A0A384KZJ8, A0A5S9XE47, Q8VXV8
      Conserved Domains (1) summary
      pfam12056
      Location:41 → 436
      DUF3537; Protein of unknown function (DUF3537)
    Nucleotide Protein
    Heading Accession and Version

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