lipid-binding serum glycoprotein family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: lipid-binding serum glycoprotein family protein
Primary source: TAIR:AT3G20270
Locus tag: AT3G20270
See related: Araport:AT3G20270
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 8

Sequence:: Chromosome: 3; NC_003074.8 (7067057..7071039)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

AtLBR-2 might be a key molecule that is indispensable for the up-regulation of defense-related genes and for salicylic acid signaling pathway. [AtLBR-2]
Title: Transcriptome analysis reveals key roles of AtLBR-2 in LPS-induced defense responses in plants.
Results demonstrate the biological importance of LBRs for induction of LPS-triggered defence responses in plants and the functional similarities among LBP/BPI subfamily from various organisms. [LBR-2]
Title: Arabidopsis LBP/BPI related-1 and -2 bind to LPS directly and regulate PR1 expression.

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General gene information

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NM_001203010.1

Supported by ESTs:

NM_001338470.1

Supported by ESTs:

NM_112918.5

Supported by ESTs:

NM_180675.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables lipid binding	IEA Inferred from Electronic Annotation more info
enables lipopolysaccharide binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within reactive oxygen species biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of gene expression	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in apoplast	IDA Inferred from Direct Assay more info	PubMed
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in extracellular space	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: lipid-binding serum glycoprotein family protein

NP_001189939.1

lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), F-box domain, Skp2-like (InterPro:IPR022364), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT1G04970.1).

NP_188662.3

lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT1G04970.1); Has 465 Blast hits to 462 proteins in 65 species: Archae - 2; Bacteria - 0; Metazoa - 380; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NP_851006.1

lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), F-box domain, Skp2-like (InterPro:IPR022364), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT1G04970.1); Has 490 Blast hits to 486 proteins in 66 species: Archae - 2; Bacteria - 0; Metazoa - 380; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

7067057..7071039

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001338468.1 → NP_001327407.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

A0A1I9LS82, Q8VYC2, Q9LTR5

UniProtKB/TrEMBL

A0A178V830

Conserved Domains (2) summary

cd00025
Location:66 → 290

BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

cd00026
Location:314 → 510

BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
NM_001338469.1 → NP_001327406.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

A0A1I9LS82, Q8VYC2, Q9LTR5

UniProtKB/TrEMBL

A0A178V830

Conserved Domains (2) summary

cd00025
Location:66 → 290

BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

cd00026
Location:314 → 510

BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
NM_001203010.1 → NP_001189939.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001189939.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FAW2, F4JDK0

Conserved Domains (2) summary

cd00025
Location:273 → 497

BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

cd00026
Location:521 → 717

BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
NM_112918.5 → NP_188662.3 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_188662.3

Status: REVIEWED

UniProtKB/Swiss-Prot

A0A1I9LS82, Q8VYC2, Q9LTR5

UniProtKB/TrEMBL

A0A178V830

Conserved Domains (2) summary

cd00025
Location:66 → 290

BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

cd00026
Location:314 → 510

BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
NM_180675.1 → NP_851006.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851006.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FAW2, F4JDK0

Conserved Domains (2) summary

cd00025
Location:273 → 497

BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

cd00026
Location:521 → 717

BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
NM_001338470.1 → NP_001327405.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V830, A0A1I9LS80