U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821572, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT3G20280
    Locus tag
    AT3G20280
    See related
    Araport:AT3G20280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (7071193..7074697)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DUF1666 family protein (DUF1666) Neighboring gene lipid-binding serum glycoprotein family protein Neighboring gene EPS15 homology domain 1 Neighboring gene extracellular ligand-gated ion channel protein (DUF3537)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001338471.1
    NM_001338472.1
    NM_001338473.1
    NM_112919.3
    NM_180676.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_566656.3
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 12041 Blast hits to 6136 proteins in 701 species: Archae - 24; Bacteria - 2898; Metazoa - 3663; Fungi - 2202; Plants - 270; Viruses - 207; Other Eukaryotes - 2777 (source: NCBI BLink).
    NP_851007.1
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 11431 Blast hits to 6184 proteins in 707 species: Archae - 24; Bacteria - 2884; Metazoa - 3648; Fungi - 2195; Plants - 284; Viruses - 200; Other Eukaryotes - 2196 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7071193..7074697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180676.2 → NP_851007.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851007.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH09, A0A384KDS3, A0A5S9XE46, A8MQI3
      Conserved Domains (2) summary
      PHA03255
      Location:442 → 613
      PHA03255; BDLF3; Provisional
      cd15489
      Location:309 → 355
      PHD_SF; PHD finger superfamily

    2. NM_001338471.1 → NP_001326649.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPX7, A0A5S9XE46

    3. NM_001338472.1 → NP_001326650.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH09, A0A384KDS3, A0A5S9XE46, A8MQI3
      Conserved Domains (2) summary
      PHA03255
      Location:442 → 613
      PHA03255; BDLF3; Provisional
      cd15489
      Location:309 → 355
      PHD_SF; PHD finger superfamily

    4. NM_001338473.1 → NP_001326651.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPX7, A0A5S9XE46

    5. NM_112919.3 → NP_566656.3  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566656.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5PNS0
      Conserved Domains (2) summary
      PHA03255
      Location:181 → 352
      PHA03255; BDLF3; Provisional
      cl22851
      Location:48 → 94
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PNS0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.