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    paired amphipathic helix Sin3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822014, updated on 18-Sep-2024

    Summary

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    Official Full Name
    paired amphipathic helix Sin3-like protein
    Primary source
    TAIR:AT3G24260
    Locus tag
    AT3G24260
    See related
    Araport:AT3G24260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (8793837..8794961, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glycine-rich protein Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein Neighboring gene pumilio 25 Neighboring gene small acidic protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    paired amphipathic helix Sin3-like protein
    NP_189069.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28870.1); Has 220 Blast hits to 218 proteins in 65 species: Archae - 7; Bacteria - 6; Metazoa - 43; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8793837..8794961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113332.1 → NP_189069.1  paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189069.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFQ0, A0A654FAF1, Q9LK19
      Conserved Domains (2) summary
      smart00761
      Location:210 → 299
      HDAC_interact; Histone deacetylase (HDAC) interacting
      cl04955
      Location:75 → 152
      LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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