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    Serinc-domain containing serine and sphingolipid biosynthesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819791, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    Primary source
    TAIR:AT3G06170
    Locus tag
    AT3G06170
    See related
    Araport:AT3G06170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28L1.11; F28L1_11
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (1867415..1869963)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING zinc finger protein Neighboring gene cytochrome P450 family protein Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene Ribosomal protein L34e superfamily protein Neighboring gene BTB-POZ and MATH domain 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111492.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    NP_187268.2
    • Serinc-domain containing serine and sphingolipid biosynthesis protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT1G16180.2); Has 780 Blast hits to 771 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 443; Fungi - 127; Plants - 140; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1867415..1869963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111492.5 → NP_187268.2  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187268.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDP7, A0A384KAU2, Q494Q0
      Conserved Domains (1) summary
      pfam03348
      Location:8 → 407
      Serinc; Serine incorporator (Serinc)
    Nucleotide Protein
    Heading Accession and Version

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