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    PP2-A12 phloem protein 2-A12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837826, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PP2-A12
    Official Full Name
    phloem protein 2-A12
    Primary source
    TAIR:AT1G12710
    Locus tag
    AT1G12710
    See related
    Araport:AT1G12710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPP2-A12; phloem protein 2-A12; T12C24.23; T12C24_23
    Summary
    This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.
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    Genomic context

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    See PP2-A12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (4326739..4328616, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phosphoenolpyruvate carboxylase-related kinase 2 Neighboring gene RNA processing FACTOR Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Dinant S, et al. Plant Physiol, 2003 Jan. PMID 12529520, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332044.1
    NM_101141.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    phloem protein 2-A12
    NP_172731.1
    • phloem protein 2-A12 (PP2-A12); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1); Has 458 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4326739..4328616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101141.4 → NP_172731.1  phloem protein 2-A12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172731.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LN77
      UniProtKB/TrEMBL
      A0A654EBA6
      Conserved Domains (1) summary
      pfam14299
      Location:121 → 281
      PP2; Phloem protein 2

    2. NM_001332044.1 → NP_001322372.1  phloem protein 2-A12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATV4, A0A654EBA6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LN77.1

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