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    EXPB3 expansin B3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828940, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EXPB3
    Official Full Name
    expansin B3
    Primary source
    TAIR:AT4G28250
    Locus tag
    AT4G28250
    See related
    Araport:AT4G28250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEXPB3; ATHEXP BETA 1.6; expansin B3; F26K10.130; F26K10_130
    Summary
    putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
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    Genomic context

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    See EXPB3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (13999625..14002124, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAD(P)H dehydrogenase B1 Neighboring gene uncharacterized protein Neighboring gene Wound-responsive family protein Neighboring gene acyl-UDP-N-acetylglucosamine O-acyltransferase Neighboring gene RING membrane-anchor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expansins are involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Wieczorek K, et al. Plant J, 2006 Oct. PMID 16942607
    2. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
    3. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084985.1
    NM_001341907.1
    NM_001341908.1
    NM_118965.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall loosening NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in sexual reproduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within syncytium formation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    expansin B3
    NP_001078454.1
    • expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 2090 Blast hits to 2086 proteins in 147 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 5; Plants - 2024; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    NP_567803.1
    • expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13999625..14002124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118965.4 → NP_567803.1  expansin B3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567803.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0I2
      UniProtKB/TrEMBL
      A0A178USU9, A0A5S9XWL3, Q8LBG2
      Conserved Domains (2) summary
      PLN00193
      Location:8 → 260
      PLN00193; expansin-A; Provisional
      cd22275
      Location:36 → 157
      DPBB_EXPB_N; N-terminal double-psi beta-barrel fold domain of the beta-expansin subfamily

    2. NM_001084985.1 → NP_001078454.1  expansin B3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078454.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FTT0, A8MSF9, Q8LBG2
      Conserved Domains (1) summary
      PLN03023
      Location:41 → 255
      PLN03023; Expansin-like B1; Provisional

    3. NM_001341907.1 → NP_001329906.1  expansin B3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B992

    4. NM_001341908.1 → NP_001329907.1  expansin B3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B980
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M0I2.2

    Gene LinkOut

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