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    Regulator of Vps4 activity in the MVB pathway protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829369, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Regulator of Vps4 activity in the MVB pathway protein
    Primary source
    TAIR:AT4G32350
    Locus tag
    AT4G32350
    See related
    Araport:AT4G32350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8B4.50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (15617361..15621062)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene Pyridine nucleotide-disulfide oxidoreductase family protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342136.1
    NM_001342137.1
    NM_119387.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Regulator of Vps4 activity in the MVB pathway protein
    NP_194961.2
    • Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G79910.1); Has 2836 Blast hits to 2289 proteins in 246 species: Archae - 0; Bacteria - 95; Metazoa - 1034; Fungi - 145; Plants - 397; Viruses - 5; Other Eukaryotes - 1160 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15617361..15621062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119387.3 → NP_194961.2  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194961.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXY7, A0A654FUT9, Q8RXT2
      Conserved Domains (1) summary
      pfam03398
      Location:15 → 170
      Ist1; Regulator of Vps4 activity in the MVB pathway

    2. NM_001342136.1 → NP_001328402.1  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4K6, O49357

    3. NM_001342137.1 → NP_001328401.1  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXY7, A0A654FUT9, Q8RXT2
      Conserved Domains (1) summary
      pfam03398
      Location:15 → 170
      Ist1; Regulator of Vps4 activity in the MVB pathway
    Nucleotide Protein
    Heading Accession and Version

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