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    Pre-mRNA splicing Prp18-interacting factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823738, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pre-mRNA splicing Prp18-interacting factor
    Primary source
    TAIR:AT3G45950
    Locus tag
    AT3G45950
    See related
    Araport:AT3G45950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (16889461..16890803, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene Glycosyl hydrolases family 31 protein Neighboring gene tRNA-Val Neighboring gene expansin-like A3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114464.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pre-mRNA splicing Prp18-interacting factor
    NP_190181.1
    • Pre-mRNA splicing Prp18-interacting factor; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 528 Blast hits to 525 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 133; Plants - 63; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16889461..16890803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114464.2 → NP_190181.1  Pre-mRNA splicing Prp18-interacting factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190181.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XI70, A0A654FDB2, Q9LZT6
      Conserved Domains (1) summary
      pfam11708
      Location:136 → 355
      Slu7; Pre-mRNA splicing Prp18-interacting factor
    Nucleotide Protein
    Heading Accession and Version

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