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    mediator of RNA polymerase II transcription subunit-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824500, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of RNA polymerase II transcription subunit-like protein
    Primary source
    TAIR:AT3G53320
    Locus tag
    AT3G53320
    See related
    Araport:AT3G53320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (19769150..19772453, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 71, subfamily B, polypeptide 32 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene plastocyanin-like domain-containing protein Neighboring gene nuclear factor Y, subunit B10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel Arabidopsis microtubule-associated proteins track growing microtubule plus ends. Wong JH, et al. BMC Plant Biol, 2017 Feb 2. PMID 28148225, Free PMC Article
    2. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115192.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitotic spindle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit-like protein
    NP_190900.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast hits to 5993 proteins in 551 species: Archae - 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19769150..19772453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115192.3 → NP_190900.1  mediator of RNA polymerase II transcription subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190900.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V973, A0A5S9XM43, Q9LFI5
      Conserved Domains (1) summary
      pfam05109
      Location:193 → 486
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein
    Heading Accession and Version

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