U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TTA2 fibronectin type III domain protein (DUF1423) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825525, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TTA2
    Official Full Name
    fibronectin type III domain protein (DUF1423)
    Primary source
    TAIR:AT3G63500
    Locus tag
    AT3G63500
    See related
    Araport:AT3G63500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TITANIA 2
    Summary
    Encodes a PHD-finger protein that, with TTA2, is redundantly required for MP-dependent embryonic root meristem initiation.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TTA2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (23446230..23450284, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 40 Neighboring gene ATP binding microtubule motor family protein Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene carotenoid cleavage dioxygenase 1 Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Control of embryonic meristem initiation in Arabidopsis by PHD-finger protein complexes. Saiga S, et al. Development, 2012 Apr. PMID 22378640
    2. Arabidopsis plant homeodomain finger proteins operate downstream of auxin accumulation in specifying the vasculature and primary root meristem. Thomas CL, et al. Plant J, 2009 Aug. PMID 19392692
    3. The non-JAZ TIFY protein TIFY8 from Arabidopsis thaliana is a transcriptional repressor. Cuéllar Pérez A, et al. PLoS One, 2014. PMID 24416306, Free PMC Article
    4. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001340219.1
    NM_116215.4
    NM_180412.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell fate specification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within embryonic meristem initiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within embryonic pattern specification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    fibronectin type III domain protein (DUF1423)
    NP_191909.1
    • Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 3195 Blast hits to 2635 proteins in 392 species: Archae - 10; Bacteria - 381; Metazoa - 1310; Fungi - 308; Plants - 351; Viruses - 11; Other Eukaryotes - 824 (source: NCBI BLink).
    NP_850743.1
    • Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 795 Blast hits to 695 proteins in 144 species: Archae - 6; Bacteria - 39; Metazoa - 207; Fungi - 61; Plants - 263; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23446230..23450284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180412.2 → NP_850743.1  fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J298
      Conserved Domains (2) summary
      pfam07227
      Location:532 → 656
      PHD_Oberon; PHD - plant homeodomain finger protein
      pfam16312
      Location:747 → 861
      Oberon_cc; Coiled-coil region of Oberon

    2. NM_116215.4 → NP_191909.1  fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191909.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84TI3, Q9LY65
      UniProtKB/TrEMBL
      A0A178VIZ7, A0A5S9XND9, A0A654FKF3
      Conserved Domains (2) summary
      pfam07227
      Location:807 → 931
      PHD_Oberon; PHD - plant homeodomain finger protein
      pfam16312
      Location:1022 → 1136
      Oberon_cc; Coiled-coil region of Oberon

    3. NM_001340219.1 → NP_001326078.1  fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84TI3, Q9LY65
      UniProtKB/TrEMBL
      A0A178VIZ7, A0A5S9XND9, A0A654FKF3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84TI3.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools