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    LisH/CRA/RING-U-box domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830822, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LisH/CRA/RING-U-box domains-containing protein
    Primary source
    TAIR:AT5G09630
    Locus tag
    AT5G09630
    See related
    Araport:AT5G09630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17I14.180; F17I14_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (2985766..2987699, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase 3-1 Neighboring gene pumilio 21 Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene serine carboxypeptidase-like 19 Neighboring gene pyrophosphorylase 6 Neighboring gene tRNA-Val

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121000.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LisH/CRA/RING-U-box domains-containing protein
    NP_196525.1
    • LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2); Has 826 Blast hits to 826 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 219; Plants - 140; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2985766..2987699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121000.4 → NP_196525.1  LisH/CRA/RING-U-box domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196525.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7Q2, Q9LXC7
      Conserved Domains (1) summary
      COG5109
      Location:78 → 386
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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