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    ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834329, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
    Primary source
    TAIR:AT5G43120
    Locus tag
    AT5G43120
    See related
    Araport:AT5G43120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MMG4.15; MMG4_15
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (17312543..17314579)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pumilio 14 Neighboring gene TBP-associated factor 4 Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
    NP_199126.1
    • ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (TAIR:AT5G10200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17312543..17314579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344472.1 → NP_001332016.1  ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFL1, A0A654G7G1

    2. NM_123678.1 → NP_199126.1  ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7G1, Q9FMH1
      Conserved Domains (2) summary
      sd00006
      Location:424 → 452
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:428 → 494
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

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