U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CLUB CLUB [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835532, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CLUB
    Official Full Name
    CLUB
    Primary source
    TAIR:AT5G54440
    Locus tag
    AT5G54440
    See related
    Araport:AT5G54440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTRS130; F24B18.6; F24B18_6
    Summary
    Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CLUB in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Sequence:
    Chromosome: 5; NC_003076.8 (22099764..22107849)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF295) Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene hypothetical protein (DUF295) Neighboring gene wound-responsive protein-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis TRAPPII is functionally linked to Rab-A, but not Rab-D in polar protein trafficking in trans-Golgi network. Qi X, et al. Plant Signal Behav, 2011 Nov. PMID 22067991, Free PMC Article
    2. A putative TRAPPII tethering factor is required for cell plate assembly during cytokinesis in Arabidopsis. Jaber E, et al. New Phytol, 2010 Aug. PMID 20609115
    3. VAN4 encodes a putative TRS120 that is required for normal cell growth and vein development in Arabidopsis. Naramoto S, et al. Plant Cell Physiol, 2014 Apr. PMID 24443495
    4. A specific role for Arabidopsis TRAPPII in post-Golgi trafficking that is crucial for cytokinesis and cell polarity. Qi X, et al. Plant J, 2011 Oct. PMID 21689172
    5. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001345087.1
    NM_001345088.1
    NM_124824.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell plate assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cytokinesis by cell plate formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAPPII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CLUB
    NP_200255.5
    • CLUB (CLUB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3758 (InterPro:IPR022233); Has 362 Blast hits to 266 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 118; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22099764..22107849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124824.7 → NP_200255.5  CLUB [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200255.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K0C4, Q9LSR1
      UniProtKB/TrEMBL
      A0A178UMV2, A0A5S9YDZ4, A0A654GAU5
      Conserved Domains (1) summary
      pfam12584
      Location:1142 → 1253
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

    2. NM_001345087.1 → NP_001331320.1  CLUB [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDG9, A0A5S9YDZ4, A0A654GAU5

    3. NM_001345088.1 → NP_001331319.1  CLUB [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDI8, A0A5S9YDZ4, A0A654GAU5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K0C4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.