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    FLX-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836313, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FLX-like protein
    Primary source
    TAIR:AT5G61920
    Locus tag
    AT5G61920
    See related
    Araport:AT5G61920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FLL4; FLOWERING LOCUS C EXPRESSOR-LIKE 4; FLX LIKE 4; FLX4; K22G18.4; K22G18_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (24864290..24866019)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene Calcium-dependent phospholipid-binding Copine family protein Neighboring gene APO RNA-binding protein (DUF794) Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Ding L, et al. Plant Physiol, 2013 Sep. PMID 23899645, Free PMC Article
    2. A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis. Shen L, et al. Plant Cell, 2022 Feb 3. PMID 34850922, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis.
      Title: A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis.
    2. FLX-LIKE4 (FLX4) is a novel component of the FRI-C and is essential for the activation of FLC by FRI. FLX4 is required for basal levels of FLC expression in the absence of FRIGIDA. [FLX4]
      Title: FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001126002.2
    NM_001345503.1
    NM_001345504.1
    NM_001345505.1
    NM_001345506.1
    NM_125585.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FLX-like protein
    NP_001119474.1
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_200998.1
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24864290..24866019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001126002.2 → NP_001119474.1  FLX-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119474.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH51
      UniProtKB/TrEMBL
      A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
      Conserved Domains (1) summary
      TIGR02168
      Location:42 → 234
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001345504.1 → NP_001331915.1  FLX-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFA1, A0A7G2FIV9

    3. NM_001345503.1 → NP_001331917.1  FLX-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH51
      UniProtKB/TrEMBL
      A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
      Conserved Domains (1) summary
      TIGR02168
      Location:42 → 234
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001345505.1 → NP_001331916.1  FLX-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH51
      UniProtKB/TrEMBL
      A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
      Conserved Domains (1) summary
      TIGR02168
      Location:42 → 234
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    5. NM_125585.2 → NP_200998.1  FLX-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200998.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH51
      UniProtKB/TrEMBL
      A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
      Conserved Domains (1) summary
      TIGR02168
      Location:42 → 234
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. NM_001345506.1 → NP_001331914.1  FLX-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FH51
      UniProtKB/TrEMBL
      A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
      Conserved Domains (1) summary
      TIGR02168
      Location:42 → 234
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FH51.1

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