U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Wound-responsive family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836735, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Wound-responsive family protein
    Primary source
    TAIR:AT5G66050
    Locus tag
    AT5G66050
    See related
    Araport:AT5G66050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K2A18.12; K2A18_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (26411796..26414609, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Golgi-localized GRIP domain-containing protein Neighboring gene sulfurtransferase protein 16 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001345740.1
    NM_126002.5
    NM_203270.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Wound-responsive family protein
    NP_201406.2
    • Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Wound-responsive family protein (TAIR:AT1G19660.2); Has 576 Blast hits to 576 proteins in 231 species: Archae - 17; Bacteria - 411; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    NP_974999.1
    • Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Wound-responsive family protein (TAIR:AT1G19660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26411796..26414609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345739.1 → NP_001332541.1  Wound-responsive family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDV7, A0A1P8BH91
      Conserved Domains (1) summary
      cl00553
      Location:153 → 262
      DNase-RNase; Bifunctional nuclease

    2. NM_126002.5 → NP_201406.2  Wound-responsive family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201406.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDV7, A0A5S9YHY2, Q8GWL4
      Conserved Domains (1) summary
      cl00553
      Location:153 → 262
      DNase-RNase; Bifunctional nuclease

    3. NM_001345740.1 → NP_001332542.1  Wound-responsive family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHA8, Q9FKX7

    4. NM_203270.1 → NP_974999.1  Wound-responsive family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974999.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JZ19
      Conserved Domains (2) summary
      pfam02151
      Location:200 → 229
      UVR; UvrB/uvrC motif
      pfam02577
      Location:49 → 166
      DNase-RNase; Bifunctional nuclease
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.