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    meiotically up-regulated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836827, updated on 18-Sep-2024

    Summary

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    Official Full Name
    meiotically up-regulated protein
    Primary source
    TAIR:AT5G66930
    Locus tag
    AT5G66930
    See related
    Araport:AT5G66930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATG101; AUTOPHAGY-RELATED 101; MUD21.19; MUD21_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (26725839..26727758)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene SKU5 similar 17 Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis. Li F, et al. Plant Cell, 2014 Feb. PMID 24563201, Free PMC Article
    2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161328.1
    NM_126092.5
    NM_180953.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    meiotically up-regulated protein
    NP_001154800.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 247 Blast hits to 247 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 83; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    NP_569042.2
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 251 Blast hits to 251 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    NP_851284.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 236 Blast hits to 236 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 70; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26725839..26727758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161328.1 → NP_001154800.1  meiotically up-regulated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154800.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHN9, A0A7G2FQ74, F4K264
      Conserved Domains (1) summary
      pfam07855
      Location:49 → 212
      ATG101; Autophagy-related protein 101

    2. NM_126092.5 → NP_569042.2  meiotically up-regulated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569042.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K265, Q84WU3, Q93ZX0, Q9FKY8
      UniProtKB/TrEMBL
      A0A178UAS0, A0A654GFX2
      Conserved Domains (1) summary
      pfam07855
      Location:10 → 176
      ATG101; Autophagy-related protein 101

    3. NM_180953.2 → NP_851284.1  meiotically up-regulated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851284.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K265
      Conserved Domains (1) summary
      pfam07855
      Location:10 → 123
      DUF1649; Protein of unknown function (DUF1649)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K265.1

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