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    Ran BP2/NZF zinc finger-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832624, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ran BP2/NZF zinc finger-like superfamily protein
    Primary source
    TAIR:AT5G25490
    Locus tag
    AT5G25490
    See related
    Araport:AT5G25490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T14C9.30; T14C9_30
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (8876321..8877904)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene DNA methyltransferase-2 Neighboring gene exosome complex exonuclease Neighboring gene ncRNA Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122460.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ran BP2/NZF zinc finger-like superfamily protein
    NP_197931.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT3G15680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8876321..8877904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343930.1 → NP_001331719.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIB0, A0A384KQC7, Q8GWD1
      Conserved Domains (3) summary
      sd00025
      Location:137 → 158
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00029
      Location:7 → 26
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:133 → 164
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_122460.4 → NP_197931.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197931.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIB0, A0A384KQC7, Q8GWD1
      Conserved Domains (3) summary
      sd00025
      Location:137 → 158
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00029
      Location:7 → 26
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:133 → 164
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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