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    NRSN2 neurensin 2 [ Homo sapiens (human) ]

    Gene ID: 80023, updated on 27-Nov-2024

    Summary

    Official Symbol
    NRSN2provided by HGNC
    Official Full Name
    neurensin 2provided by HGNC
    Primary source
    HGNC:HGNC:16229
    See related
    Ensembl:ENSG00000125841 MIM:610666; AllianceGenome:HGNC:16229
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C20orf98; dJ1103G7.6
    Summary
    Predicted to be involved in nervous system development. Located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in brain (RPKM 20.9), adrenal (RPKM 7.5) and 22 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See NRSN2 in Genome Data Viewer
    Location:
    20p13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (347111..354862)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (390459..398227)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (327755..335506)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12562 Neighboring gene NRSN2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12564 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12566 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12567 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12568 Neighboring gene Sharpr-MPRA regulatory region 7859/9812 Neighboring gene SRY-box transcription factor 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:326527-327290 Neighboring gene serine/arginine repetitive matrix protein 2-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:327291-328053 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:328054-328816 Neighboring gene Sharpr-MPRA regulatory region 10349 Neighboring gene Sharpr-MPRA regulatory region 12668 Neighboring gene Sharpr-MPRA regulatory region 10396 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:345627-346226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12572 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:362523-363521 Neighboring gene tribbles pseudokinase 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:379646-380146 Neighboring gene CRISPRi-validated cis-regulatory element chr20.29 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:386661-386817 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12575 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:388888-389530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:389531-390171 Neighboring gene RANBP2-type and C3HC4-type zinc finger containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:410614-411114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:411115-411615

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ23329

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in nervous system development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
     
    is_active_in transport vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in transport vesicle ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001323679.2NP_001310608.1  neurensin-2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK026982, BC001963, BP251173
      UniProtKB/Swiss-Prot
      Q9GZP1
    2. NM_001323680.2NP_001310609.1  neurensin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK026982, BC001963, CD102518, DA479487
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Related
      ENSP00000519670.1, ENST00000714402.1
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin
    3. NM_001323681.2NP_001310610.1  neurensin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK026982, BC001963, CD102518
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Related
      ENSP00000519671.1, ENST00000714403.1
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin
    4. NM_001323682.2NP_001310611.1  neurensin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK026982, BC001963, BP202782
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Related
      ENSP00000371722.2, ENST00000382285.7
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin
    5. NM_001323683.2NP_001310612.1  neurensin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL034548, AW292804
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin
    6. NM_001323684.2NP_001310613.1  neurensin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL034548, AW292804, DA708181
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin
    7. NM_001323685.2NP_001310614.1  neurensin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK026982, BC001963, DB172225
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Related
      ENSP00000519672.1, ENST00000714404.1
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin
    8. NM_024958.3NP_079234.1  neurensin-2 isoform 1

      See identical proteins and their annotated locations for NP_079234.1

      Status: VALIDATED

      Source sequence(s)
      AL136915, BC001963, BE792891, DA708181
      Consensus CDS
      CCDS12996.1
      UniProtKB/Swiss-Prot
      A8K3B2, Q6FII5, Q9GZP1, Q9NUD3
      Related
      ENSP00000371728.3, ENST00000382291.7
      Conserved Domains (1) summary
      pfam14927
      Location:22155
      Neurensin

    RNA

    1. NR_136649.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL034548, BC001963, DA708181
      Related
      ENST00000492242.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      347111..354862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      390459..398227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)