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    LINC00469 long intergenic non-protein coding RNA 469 [ Homo sapiens (human) ]

    Gene ID: 283982, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC00469provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 469provided by HGNC
    Primary source
    HGNC:HGNC:26863
    See related
    Ensembl:ENSG00000177338 AllianceGenome:HGNC:26863
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C17orf54
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00469 in Genome Data Viewer
    Location:
    17q25.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (73749270..73828537, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (74639813..74719321, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (71745409..71824676, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene sidekick cell adhesion molecule 2 Neighboring gene uncharacterized LOC101928251 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71530725-71531437 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71533005-71533777 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71536899-71537463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71542356-71542892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71544460-71544960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71544961-71545461 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71556405-71557010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71557011-71557617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71560304-71560804 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:71561780-71562370 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:71562371-71562960 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71563551-71564139 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71585035-71585539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71584531-71585034 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71585540-71586043 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71586044-71586548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71591289-71591834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71608178-71608714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71621555-71622080 Neighboring gene uncharacterized LOC124904054 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71649316-71649844 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:71682138-71682716 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71731954-71732466 Neighboring gene uncharacterized LOC100134391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71763520-71764020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766873-71767372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766371-71766872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71793394-71793894 Neighboring gene long intergenic non-protein coding RNA 2092 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71816259-71816880 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:71817072-71817648 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71824013-71824522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71825513-71826014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71826015-71826514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71839003-71839503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71853558-71854172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71854173-71854786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71873696-71874196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71874197-71874697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71902449-71902950 Neighboring gene MPRA-validated peak2991 silencer Neighboring gene uncharacterized LOC107985081 Neighboring gene uncharacterized LOC105371888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71969789-71970488 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71970489-71971186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71983339-71984178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72001833-72002829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72005404-72005904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72037304-72037804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72076161-72076662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72076663-72077162 Neighboring gene long intergenic non-protein coding RNA 2074

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. Lauc G, et al. PLoS Genet, 2013. PMID 23382691, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • FLJ40319, MGC120127

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027146.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC125421, AK097638, BC101215
      Related
      ENST00000544677.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      73749270..73828537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      74639813..74719321 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_182564.1: Suppressed sequence

      Description
      NM_182564.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8N7U9.1 GenPept UniProtKB/Swiss-Prot:Q8N7U9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials