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    MACROH2A1 macroH2A.1 histone [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711836, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MACROH2A1provided by VGNC
    Official Full Name
    macroH2A.1 histoneprovided by VGNC
    Primary source
    VGNC:VGNC:109697
    Locus tag
    EGK_16871
    See related
    Ensembl:ENSMMUG00000014465
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    H2AFY
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See MACROH2A1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (132792269..132858200, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (133049113..133114618, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene cation channel sperm associated 3 Neighboring gene paired like homeodomain 1 Neighboring gene dendritic cell associated nuclear protein 1 Neighboring gene TIFA inhibitor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    H2A histone family, member Y; macroH2A.1 histone
    Names
    core histone macro-H2A.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261740.1 → NP_001248669.1  macroH2A.1 histone

      See identical proteins and their annotated locations for NP_001248669.1

      Status: PROVISIONAL

      Source sequence(s)
      JV044585
      UniProtKB/TrEMBL
      F7BA42, F7GWS6, I0FJN0
      Related
      ENSMMUP00000008438.4, ENSMMUT00000008974.4
      Conserved Domains (2) summary
      cd00074
      Location:5 → 117
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
      cd02904
      Location:177 → 367
      Macro_H2A-like; macrodomain, macroH2A-like family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      132792269..132858200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140868.2 → XP_014996354.1  H2A histone family, member Y isoform X3

      UniProtKB/TrEMBL
      A0A5K1VFC3, F7BA42
      Related
      ENSMMUP00000018992.4, ENSMMUT00000020291.4
      Conserved Domains (2) summary
      cd00074
      Location:5 → 117
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
      cd02904
      Location:177 → 364
      Macro_H2A-like; macrodomain, macroH2A-like family

    2. XM_015140867.2 → XP_014996353.1  H2A histone family, member Y isoform X2

      UniProtKB/TrEMBL
      F7BA42, I2CUF0
      Related
      ENSMMUP00000018993.4, ENSMMUT00000020292.4
      Conserved Domains (2) summary
      cd00074
      Location:5 → 117
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
      cd02904
      Location:178 → 365
      Macro_H2A-like; macrodomain, macroH2A-like family

    3. XM_015140865.2 → XP_014996351.1  H2A histone family, member Y isoform X1

      UniProtKB/TrEMBL
      A0A8J8XTA7, G7MUD7, I2CUE9
      Conserved Domains (2) summary
      cd00074
      Location:5 → 117
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
      cd02904
      Location:178 → 368
      Macro_H2A-like; macrodomain, macroH2A-like family
    Nucleotide Protein
    Heading Accession and Version

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