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    ATG16L1 autophagy related 16 like 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714092, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATG16L1provided by VGNC
    Official Full Name
    autophagy related 16 like 1provided by VGNC
    Primary source
    VGNC:VGNC:70108
    Locus tag
    EGK_04913
    See related
    Ensembl:ENSMMUG00000023358
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATG16L1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (120700268..120745196)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (115790381..115835377)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC114671442 Neighboring gene uncharacterized LOC114671536 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative stranded viral RNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 16-1
    Names
    ATG16 autophagy related 16-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261111.1 → NP_001248040.1  autophagy-related protein 16-1

      See identical proteins and their annotated locations for NP_001248040.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047493
      UniProtKB/TrEMBL
      F7E8N5, F7E8S1, I2CV35
      Related
      ENSMMUP00000030745.4, ENSMMUT00000032859.4
      Conserved Domains (3) summary
      cd00200
      Location:296 → 586
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:308 → 345
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31 → 206
      ATG16; Autophagy protein 16 (ATG16)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      120700268..120745196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015111262.2 → XP_014966748.1  autophagy-related protein 16-1 isoform X1

      UniProtKB/TrEMBL
      A0A5S6RBG8, A0A8J8XVE0, F7E8N5, F7E8Q7, G7N976
      Related
      ENSMMUP00000030747.4, ENSMMUT00000032861.4
      Conserved Domains (4) summary
      COG2319
      Location:272 → 390
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:332 → 622
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:344 → 381
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31 → 206
      ATG16; Autophagy protein 16 (ATG16)

    2. XM_015111263.2 → XP_014966749.1  autophagy-related protein 16-1 isoform X2

      UniProtKB/TrEMBL
      F7E8N5, F7E8P6, H9FWG1
      Related
      ENSMMUP00000030748.3, ENSMMUT00000032862.4
      Conserved Domains (3) summary
      cd00200
      Location:315 → 605
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:327 → 364
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31 → 206
      ATG16; Autophagy protein 16 (ATG16)

    3. XM_028830571.1 → XP_028686404.1  autophagy-related protein 16-1 isoform X3

      UniProtKB/TrEMBL
      F7E8N5
      Conserved Domains (3) summary
      cd00200
      Location:313 → 603
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:325 → 362
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31 → 206
      ATG16; Autophagy protein 16 (ATG16)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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