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    COL4A6 collagen type IV alpha 6 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703707, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL4A6provided by VGNC
    Official Full Name
    collagen type IV alpha 6 chainprovided by VGNC
    Primary source
    VGNC:VGNC:71300
    See related
    Ensembl:ENSMMUG00000007205
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL4A6 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (104912754..105205760, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (102183411..102480545, complement)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 1 Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene collagen type IV alpha 5 chain Neighboring gene insulin receptor substrate 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-6(IV) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      104912754..105205760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001098448.4 → XP_001098448.1  collagen alpha-6(IV) chain isoform X1

      UniProtKB/TrEMBL
      G7NT43
      Related
      ENSMMUP00000009457.4, ENSMMUT00000010076.4
      Conserved Domains (2) summary
      pfam01391
      Location:794 → 851
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1572 → 1684
      C4; C-terminal tandem repeated domain in type 4 procollagen

    2. XM_028841866.1 → XP_028697699.1  collagen alpha-6(IV) chain isoform X2

      UniProtKB/TrEMBL
      G7NT43
      Conserved Domains (2) summary
      pfam01391
      Location:794 → 851
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1548 → 1660
      C4; C-terminal tandem repeated domain in type 4 procollagen

    3. XM_028841867.1 → XP_028697700.1  collagen alpha-6(IV) chain isoform X3

      UniProtKB/TrEMBL
      G7NT43
      Conserved Domains (3) summary
      pfam01391
      Location:767 → 824
      Collagen; Collagen triple helix repeat (20 copies)
      pfam05642
      Location:995 → 1217
      Sporozoite_P67; Sporozoite P67 surface antigen
      pfam01413
      Location:1545 → 1657
      C4; C-terminal tandem repeated domain in type 4 procollagen
    Nucleotide Protein
    Heading Accession and Version

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