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    STX18 syntaxin 18 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712216, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STX18provided by VGNC
    Official Full Name
    syntaxin 18provided by VGNC
    Primary source
    VGNC:VGNC:100274
    See related
    Ensembl:ENSMMUG00000020204
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See STX18 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (8378092..8503703)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (4679137..4804090, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678240 Neighboring gene uncharacterized LOC106998236 Neighboring gene 40S ribosomal protein S7-like Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene Ly1 antibody reactive

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260531.1 → NP_001247460.1  syntaxin-18

      See identical proteins and their annotated locations for NP_001247460.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047396
      UniProtKB/TrEMBL
      F6VA15, G7MSJ7, H9ZA66
      Related
      ENSMMUP00000026600.2, ENSMMUT00000028425.4
      Conserved Domains (2) summary
      cd15850
      Location:246 → 304
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:4 → 96
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      8378092..8503703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028848104.1 → XP_028703937.1  syntaxin-18 isoform X2

      Conserved Domains (2) summary
      cd15850
      Location:253 → 302
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:4 → 96
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    2. XM_028848103.1 → XP_028703936.1  syntaxin-18 isoform X1

      Related
      ENSMMUP00000043496.2, ENSMMUT00000058882.2
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa
    Nucleotide Protein
    Heading Accession and Version

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