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    TRIM28 tripartite motif containing 28 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711982, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM28provided by VGNC
    Official Full Name
    tripartite motif containing 28provided by VGNC
    Primary source
    VGNC:VGNC:79033
    See related
    Ensembl:ENSMMUG00000020051
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM28 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (58110180..58116742)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (50791075..50796538, complement)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994872 Neighboring gene solute carrier family 27 member 5 Neighboring gene zinc finger and BTB domain containing 45 Neighboring gene charged multivesicular body protein 2A Neighboring gene uncharacterized LOC106994871 Neighboring gene ubiquitin conjugating enzyme E2 M

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription intermediary factor 1-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      58110180..58116742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028838818.1 → XP_028694651.1  transcription intermediary factor 1-beta isoform X2

      UniProtKB/TrEMBL
      G7NLS2
      Conserved Domains (6) summary
      cd05502
      Location:696 → 802
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:252 → 378
      BBC; B-Box C-terminal domain
      smart00336
      Location:148 → 184
      BBOX; B-Box-type zinc finger
      cd00021
      Location:207 → 245
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15623
      Location:627 → 669
      PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
      cd16765
      Location:62 → 124
      RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)

    2. XM_028838817.1 → XP_028694650.1  transcription intermediary factor 1-beta isoform X1

      UniProtKB/TrEMBL
      G7NLS2
      Conserved Domains (6) summary
      cd05502
      Location:727 → 833
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:252 → 378
      BBC; B-Box C-terminal domain
      smart00336
      Location:148 → 184
      BBOX; B-Box-type zinc finger
      cd00021
      Location:207 → 245
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15623
      Location:658 → 700
      PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
      cd16765
      Location:62 → 124
      RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)

    3. XM_028838819.1 → XP_028694652.1  transcription intermediary factor 1-beta isoform X3

      UniProtKB/TrEMBL
      F7G9W9, G7NLS2
      Related
      ENSMMUP00000026375.4, ENSMMUT00000028190.4
      Conserved Domains (6) summary
      cd05502
      Location:695 → 801
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:252 → 378
      BBC; B-Box C-terminal domain
      smart00336
      Location:148 → 184
      BBOX; B-Box-type zinc finger
      cd00021
      Location:207 → 245
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15623
      Location:626 → 668
      PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
      cd16765
      Location:62 → 124
      RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)
    Nucleotide Protein
    Heading Accession and Version

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