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    LOC712405 ficolin-1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712405, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC712405
    Gene description
    ficolin-1
    See related
    Ensembl:ENSMMUG00000059959
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    FCN1
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    Genomic context

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    See LOC712405 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (3316591..3325013)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (3414941..3423364)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993575 Neighboring gene uncharacterized LOC114672620 Neighboring gene ficolin-2-like Neighboring gene ficolin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ficolin-1
    Names
    ficolin (collagen/fibrinogen domain containing) 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      3316591..3325013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015116399.2 → XP_014971885.2  ficolin-1

      UniProtKB/TrEMBL
      A0A5F8AJI6, G7NF89
      Related
      ENSMMUP00000077109.1, ENSMMUT00000100521.1
      Conserved Domains (2) summary
      pfam01391
      Location:51 → 107
      Collagen; Collagen triple helix repeat (20 copies)
      cd00087
      Location:115 → 325
      FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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