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    COL11A1 collagen type XI alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712753, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL11A1provided by VGNC
    Official Full Name
    collagen type XI alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:71289
    See related
    Ensembl:ENSMMUG00000004103
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL11A1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    68
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (121115851..121335153)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (103732032..103950773, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene RNPC3 divergent transcript Neighboring gene uncharacterized LOC114678158 Neighboring gene U2 spliceosomal RNA Neighboring gene dnaJ homolog subfamily A member 1 pseudogene Neighboring gene olfactomedin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(XI) chain
    Names
    collagen alpha-1(XI) chain-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      121115851..121335153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015146004.2 → XP_015001490.1  collagen alpha-1(XI) chain isoform X1

      UniProtKB/TrEMBL
      G7MI65
      Conserved Domains (3) summary
      pfam01391
      Location:892 → 951
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:38 → 229
      TSPN; Thrombospondin N-terminal -like domains
      pfam01410
      Location:1629 → 1855
      COLFI; Fibrillar collagen C-terminal domain

    2. XM_015146012.2 → XP_015001498.1  collagen alpha-1(XI) chain isoform X2

      UniProtKB/TrEMBL
      G7MI65
      Conserved Domains (3) summary
      pfam01391
      Location:890 → 949
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:38 → 229
      TSPN; Thrombospondin N-terminal -like domains
      pfam01410
      Location:1627 → 1853
      COLFI; Fibrillar collagen C-terminal domain

    3. XM_015146016.2 → XP_015001502.1  collagen alpha-1(XI) chain isoform X3

      UniProtKB/TrEMBL
      F6Z5V7, G7MI65, H9FPY0
      Related
      ENSMMUP00000005488.4, ENSMMUT00000005828.4
      Conserved Domains (3) summary
      pfam01391
      Location:841 → 900
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:38 → 229
      TSPN; Thrombospondin N-terminal -like domains
      pfam01410
      Location:1578 → 1804
      COLFI; Fibrillar collagen C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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