U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CHD9 chromodomain helicase DNA binding protein 9 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696367, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CHD9provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 9provided by VGNC
    Primary source
    VGNC:VGNC:71101
    See related
    Ensembl:ENSMMUG00000016310
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CHD9 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (40246593..40445973)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (37128742..37302089)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674293 Neighboring gene uncharacterized LOC114674294 Neighboring gene uncharacterized LOC106995020 Neighboring gene pachytene checkpoint protein 2 homolog Neighboring gene golgin subfamily A member 8T-like Neighboring gene small nucleolar RNA U13 Neighboring gene 5S ribosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chromodomain-helicase-DNA-binding protein 9
    Names
    chromodomain-helicase-DNA-binding protein 9-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      40246593..40445973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028840897.1 → XP_028696730.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (6) summary
      smart00592
      Location:2541 → 2585
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:176 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      COG5641
      Location:161 → 568
      GAT1; GATA Zn-finger-containing transcription factor [Transcription]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    2. XM_028840896.1 → XP_028696729.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      F7GT65, G7NPA7
      Related
      ENSMMUP00000021427.4, ENSMMUT00000022909.4
      Conserved Domains (6) summary
      smart00592
      Location:2558 → 2602
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:176 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      COG5641
      Location:161 → 568
      GAT1; GATA Zn-finger-containing transcription factor [Transcription]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    3. XM_028840898.1 → XP_028696731.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (7) summary
      PTZ00121
      Location:511 → 755
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2484 → 2533
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5048
      Location:80 → 479
      COG5048; FOG: Zn-finger [General function prediction only]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl24283
      Location:164 → 355
      DUF5349; Family of unknown function (DUF5349)

    4. XM_015126130.2 → XP_014981616.2  chromodomain-helicase-DNA-binding protein 9 isoform X6

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (7) summary
      PTZ00121
      Location:511 → 755
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2484 → 2533
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5048
      Location:80 → 479
      COG5048; FOG: Zn-finger [General function prediction only]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl24283
      Location:164 → 355
      DUF5349; Family of unknown function (DUF5349)

    5. XM_015126128.2 → XP_014981614.2  chromodomain-helicase-DNA-binding protein 9 isoform X3

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (7) summary
      PTZ00121
      Location:511 → 755
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2542 → 2586
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5048
      Location:80 → 479
      COG5048; FOG: Zn-finger [General function prediction only]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl24283
      Location:164 → 355
      DUF5349; Family of unknown function (DUF5349)

    6. XM_028840895.1 → XP_028696728.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      F7GT65, G7NPA7
      Conserved Domains (6) summary
      smart00592
      Location:2558 → 2602
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:176 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      COG5641
      Location:161 → 568
      GAT1; GATA Zn-finger-containing transcription factor [Transcription]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    7. XM_015126126.2 → XP_014981612.2  chromodomain-helicase-DNA-binding protein 9 isoform X2

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (6) summary
      smart00592
      Location:2557 → 2601
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:811 → 1480
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:176 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      COG5641
      Location:161 → 568
      GAT1; GATA Zn-finger-containing transcription factor [Transcription]
      cd18663
      Location:770 → 828
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:686 → 750
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    8. XM_015126131.2 → XP_014981617.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (6) summary
      smart00592
      Location:2084 → 2128
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:218 → 278
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:405 → 554
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:389 → 676
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:708 → 822
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:300 → 353
      Chromo; Chromo (CHRromatin Organization MOdifier) domain

    9. XM_028840899.1 → XP_028696732.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (6) summary
      PTZ00121
      Location:37 → 281
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2068 → 2112
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:337 → 1006
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:296 → 354
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:212 → 276
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:386 → 607
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

    10. XM_015126132.2 → XP_014981618.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (6) summary
      smart00592
      Location:2051 → 2095
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:185 → 245
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:372 → 521
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:356 → 643
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:675 → 789
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:267 → 320
      Chromo; Chromo (CHRromatin Organization MOdifier) domain

    11. XM_028840900.1 → XP_028696733.1  chromodomain-helicase-DNA-binding protein 9 isoform X10

      UniProtKB/TrEMBL
      G7NPA7
      Conserved Domains (6) summary
      PTZ00121
      Location:4 → 248
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2035 → 2079
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:304 → 973
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:263 → 321
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:179 → 243
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:353 → 574
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

    12. XM_028840901.1 → XP_028696734.1  chromodomain-helicase-DNA-binding protein 9 isoform X11

      Conserved Domains (4) summary
      smart00592
      Location:1897 → 1941
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:150 → 819
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:109 → 167
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:25 → 89
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    RNA

    1. XR_003725398.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials