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    SYVN1 synoviolin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716698, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SYVN1provided by VGNC
    Official Full Name
    synoviolin 1provided by VGNC
    Primary source
    VGNC:VGNC:78183
    See related
    Ensembl:ENSMMUG00000018781
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SYVN1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (9391876..9399141)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (9299661..9306893)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene HIG1 domain family member 1A, mitochondrial pseudogene Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene zinc finger HIT-type containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase synoviolin
    Names
    synovial apoptosis inhibitor 1, synoviolin
    NP_001181557.1
    XP_028688631.1
    XP_028688632.1
    XP_028688633.1
    XP_028688634.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194628.2 → NP_001181557.1  E3 ubiquitin-protein ligase synoviolin

      See identical proteins and their annotated locations for NP_001181557.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000104
      UniProtKB/TrEMBL
      F6ZQL6, I0FVP8
      Related
      ENSMMUP00000024720.2, ENSMMUT00000026406.4
      Conserved Domains (2) summary
      PHA03247
      Location:534 → 607
      PHA03247; large tegument protein UL36; Provisional
      COG5243
      Location:10 → 333
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      9391876..9399141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832798.1 → XP_028688631.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      UniProtKB/TrEMBL
      G7NCF6
      Conserved Domains (1) summary
      COG5243
      Location:10 → 333
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    2. XM_028832800.1 → XP_028688633.1  E3 ubiquitin-protein ligase synoviolin isoform X2

      UniProtKB/TrEMBL
      G7NCF6
      Conserved Domains (1) summary
      COG5243
      Location:10 → 333
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    3. XM_028832801.1 → XP_028688634.1  E3 ubiquitin-protein ligase synoviolin isoform X3

      UniProtKB/TrEMBL
      I0FVP8
      Related
      ENSMMUP00000024718.4, ENSMMUT00000026404.4
      Conserved Domains (2) summary
      PHA03247
      Location:533 → 606
      PHA03247; large tegument protein UL36; Provisional
      COG5243
      Location:10 → 333
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    4. XM_028832799.1 → XP_028688632.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      UniProtKB/TrEMBL
      G7NCF6
      Conserved Domains (1) summary
      COG5243
      Location:10 → 333
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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