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    SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716230, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SUPT6Hprovided by VGNC
    Official Full Name
    SPT6 homolog, histone chaperone and transcription elongation factorprovided by VGNC
    Primary source
    VGNC:VGNC:78057
    Locus tag
    EGK_08333
    See related
    Ensembl:ENSMMUG00000004708
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT6H in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (24290562..24331525)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (22682340..22722139)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase related Neighboring gene KIAA0100 Neighboring gene stromal cell derived factor 2 Neighboring gene protein interacting with cyclin A1 Neighboring gene RAB34, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT6
    Names
    suppressor of Ty 6 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      24290562..24331525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015118904.2 → XP_014974390.1  transcription elongation factor SPT6 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZLB3, A0A663D9I9, A0A8J8Y836, F6RDZ4, G7NGK3
      Related
      ENSMMUP00000006255.3, ENSMMUT00000006649.4
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1304 → 1514
      SH2_2; SH2 domain

    2. XM_028836136.1 → XP_028691969.1  transcription elongation factor SPT6 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZLB3, A0A663D9I9, A0A8J8Y836, F6RDZ4, G7NGK3
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1304 → 1514
      SH2_2; SH2 domain

    3. XM_028836137.1 → XP_028691970.1  transcription elongation factor SPT6 isoform X2

      UniProtKB/TrEMBL
      A0A5F8A9K6
      Related
      ENSMMUP00000073646.1, ENSMMUT00000080688.1
      Conserved Domains (2) summary
      COG2183
      Location:249 → 1230
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1185 → 1389
      SH2_2; SH2 domain
    Nucleotide Protein
    Heading Accession and Version

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