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    LMX1B LIM homeobox transcription factor 1 beta [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701912, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LMX1Bprovided by VGNC
    Official Full Name
    LIM homeobox transcription factor 1 betaprovided by VGNC
    Primary source
    VGNC:VGNC:74437
    See related
    Ensembl:ENSMMUG00000002236
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LMX1B in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (13929361..14016141, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (12246282..12334504, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672624 Neighboring gene zinc finger and BTB domain containing 43 Neighboring gene small nucleolar RNA SNORD116 Neighboring gene multivesicular body subunit 12B Neighboring gene PBX homeobox 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM homeobox transcription factor 1-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      13929361..14016141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001097412.4 → XP_001097412.2  LIM homeobox transcription factor 1-beta isoform X2

      UniProtKB/TrEMBL
      F6VZX1, G7NEQ2, I2CX08
      Related
      ENSMMUP00000002989.4, ENSMMUT00000003167.4
      Conserved Domains (3) summary
      cd09371
      Location:56 → 108
      LIM1_Lmx1b; The first LIM domain of Lmx1b
      cd09378
      Location:115 → 169
      LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b
      pfam00046
      Location:222 → 276
      Homeobox; Homeobox domain

    2. XM_028834832.1 → XP_028690665.1  LIM homeobox transcription factor 1-beta isoform X1

      UniProtKB/TrEMBL
      G7NEQ2
      Conserved Domains (3) summary
      cd09371
      Location:56 → 108
      LIM1_Lmx1b; The first LIM domain of Lmx1b
      cd09378
      Location:115 → 169
      LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b
      pfam00046
      Location:222 → 276
      Homeobox; Homeobox domain

    RNA

    1. XR_003723137.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials