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    CLIP3 CAP-Gly domain containing linker protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712058, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLIP3provided by VGNC
    Official Full Name
    CAP-Gly domain containing linker protein 3provided by VGNC
    Primary source
    VGNC:VGNC:109601
    Locus tag
    EGK_10510
    See related
    Ensembl:ENSMMUG00000051879
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    CLIPR59; CLIPR-59
    Orthologs
    human mouse all
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    Genomic context

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    See CLIP3 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (35435325..35453616, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (31949868..31968239, complement)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene spectrin repeat containing nuclear envelope family member 4 Neighboring gene alkB homolog 6 Neighboring gene uncharacterized LOC114674109 Neighboring gene THAP domain containing 8 Neighboring gene WD repeat domain 62 Neighboring gene 60S ribosomal protein L37-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Form deprivation modulates retinal neurogenesis in primate experimental myopia. Tkatchenko AV, et al. Proc Natl Acad Sci U S A, 2006 Mar 21. PMID 16537371, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule plus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule plus-end IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CAP-Gly domain-containing linker protein 3
    Names
    CLIP-170-related protein
    Cytoplasmic linker protein 170-related 59 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194179.2 → NP_001181108.1  CAP-Gly domain-containing linker protein 3

      See identical proteins and their annotated locations for NP_001181108.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000230
      UniProtKB/TrEMBL
      A0A5F7ZWG4, A0A8J8XMT3, F7CAQ9
      Related
      ENSMMUP00000068980.1, ENSMMUT00000098326.1
      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      35435325..35453616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001101586.3 → XP_001101586.1  CAP-Gly domain-containing linker protein 3 isoform X1

      See identical proteins and their annotated locations for XP_001101586.1

      UniProtKB/TrEMBL
      A0A5F7ZWG4, A0A8J8XMT3, F7CAQ9
      Related
      ENSMMUP00000074720.1, ENSMMUT00000101089.1
      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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