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    LIMA1 LIM domain and actin binding 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713519, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LIMA1provided by VGNC
    Official Full Name
    LIM domain and actin binding 1provided by VGNC
    Primary source
    VGNC:VGNC:74114
    See related
    Ensembl:ENSMMUG00000016471
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LIMA1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (49782840..49888191, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (48461829..48567846, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene developmental pluripotency-associated protein 3 Neighboring gene ceramide synthase 5 Neighboring gene U6 spliceosomal RNA Neighboring gene family with sequence similarity 186 member A Neighboring gene 60S ribosomal protein L26 pseudogene Neighboring gene La ribonucleoprotein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM domain and actin-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      49782840..49888191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151695.2 → XP_015007181.2  LIM domain and actin-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      F6TL46, H9FVJ6
      Related
      ENSMMUP00000019723.4, ENSMMUT00000021093.4
      Conserved Domains (2) summary
      cd09485
      Location:390 → 442
      LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
      pfam15782
      Location:231 → 398
      GREB1; Gene regulated by oestrogen in breast cancer

    2. XM_015151693.2 → XP_015007179.2  LIM domain and actin-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      F6TL46, G7N6Y9
      Conserved Domains (1) summary
      cd09485
      Location:391 → 443
      LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)

    3. XM_015151696.2 → XP_015007182.2  LIM domain and actin-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      F6TL46
      Conserved Domains (1) summary
      cd09485
      Location:349 → 401
      LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
    Nucleotide Protein
    Heading Accession and Version

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