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    SCML1 Scm polycomb group protein like 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714239, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SCML1provided by VGNC
    Official Full Name
    Scm polycomb group protein like 1provided by VGNC
    Primary source
    VGNC:VGNC:76978
    See related
    Ensembl:ENSMMUG00000012899
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SCML1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (17476447..17494420)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (17107135..17124900)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene NHS actin remodeling regulator Neighboring gene retinoic acid induced 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene BEN domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Adaptive evolution of SCML1 in primates, a gene involved in male reproduction. Wu HH, et al. BMC Evol Biol, 2008 Jul 5. PMID 18601738, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sex comb on midleg-like protein 1
    Names
    sex comb on midleg like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114112.1 → NP_001107584.1  sex comb on midleg-like protein 1

      See identical proteins and their annotated locations for NP_001107584.1

      Status: PROVISIONAL

      Source sequence(s)
      EU370786
      UniProtKB/Swiss-Prot
      B0FZP2
      UniProtKB/TrEMBL
      A0A1D5RB39, I0FU32
      Related
      ENSMMUP00000057530.2, ENSMMUT00000068542.2
      Conserved Domains (2) summary
      cd09578
      Location:252 → 323
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:255 → 323
      SAM; Sterile alpha motif

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      17476447..17494420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841827.1 → XP_028697660.1  sex comb on midleg-like protein 1 isoform X1

      Conserved Domains (1) summary
      cd09578
      Location:323 → 394
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    2. XM_015126971.2 → XP_014982457.1  sex comb on midleg-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RB39, I0FU32
      Conserved Domains (2) summary
      cd09578
      Location:290 → 361
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:293 → 361
      SAM; Sterile alpha motif

    3. XM_015126973.2 → XP_014982459.1  sex comb on midleg-like protein 1 isoform X6

      UniProtKB/Swiss-Prot
      B0FZP2
      UniProtKB/TrEMBL
      A0A1D5RB39, I0FU32
      Conserved Domains (2) summary
      cd09578
      Location:252 → 323
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:255 → 323
      SAM; Sterile alpha motif

    4. XM_015126969.2 → XP_014982455.1  sex comb on midleg-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5RB39, I0FU32
      Conserved Domains (1) summary
      cd09578
      Location:291 → 362
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    5. XM_028841828.1 → XP_028697661.1  sex comb on midleg-like protein 1 isoform X7

      Conserved Domains (1) summary
      cd09578
      Location:219 → 290
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    6. XM_015126974.2 → XP_014982460.1  sex comb on midleg-like protein 1 isoform X7

      Conserved Domains (1) summary
      cd09578
      Location:219 → 290
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    7. XM_015126967.2 → XP_014982453.1  sex comb on midleg-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5RB39, I0FU32
      Conserved Domains (1) summary
      cd09578
      Location:291 → 362
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    8. XM_015126970.2 → XP_014982456.1  sex comb on midleg-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RB39, I0FU32
      Conserved Domains (2) summary
      cd09578
      Location:290 → 361
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:293 → 361
      SAM; Sterile alpha motif

    9. XM_015126965.2 → XP_014982451.1  sex comb on midleg-like protein 1 isoform X2

      Conserved Domains (1) summary
      cd09578
      Location:322 → 393
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    10. XM_015126972.2 → XP_014982458.1  sex comb on midleg-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5RAI7, A0A1D5RB39, I0FU32
      Conserved Domains (2) summary
      cd09578
      Location:285 → 356
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:288 → 356
      SAM; Sterile alpha motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B0FZP2.1 GenPept UniProtKB/Swiss-Prot:B0FZP2

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