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    TSHZ1 teashirt zinc finger homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703018, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TSHZ1provided by VGNC
    Official Full Name
    teashirt zinc finger homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:78553
    Locus tag
    EGK_09783
    See related
    Ensembl:ENSMMUG00000014916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TSHZ1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (4723312..4803406, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (65391139..65472117)

    Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994578 Neighboring gene small integral membrane protein 21 Neighboring gene prostaglandin reductase 3 Neighboring gene zinc finger protein 407 Neighboring gene uncharacterized LOC114673692

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    teashirt homolog 1
    Names
    Serologically defined colon cancer antigen 33

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041771.1 Reference Mmul_10 Primary Assembly

      Range
      4723312..4803406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002800976.3 → XP_002801022.2  teashirt homolog 1 isoform X3

      UniProtKB/TrEMBL
      I0FGX3
      Conserved Domains (3) summary
      cd00086
      Location:841 → 909
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00020
      Location:203 → 225
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:925 → 1015
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)

    2. XM_001091328.4 → XP_001091328.4  teashirt homolog 1 isoform X2

      UniProtKB/TrEMBL
      F6TV51, I0FGX3
      Related
      ENSMMUP00000019571.3, ENSMMUT00000020922.4
      Conserved Domains (3) summary
      cd00086
      Location:886 → 954
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00020
      Location:248 → 270
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:970 → 1060
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)

    3. XM_015122205.2 → XP_014977691.2  teashirt homolog 1 isoform X3

      UniProtKB/TrEMBL
      I0FGX3
      Conserved Domains (3) summary
      cd00086
      Location:841 → 909
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00020
      Location:203 → 225
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:925 → 1015
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)

    4. XM_028838073.1 → XP_028693906.1  teashirt homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AS25, I0FGX3
      Related
      ENSMMUP00000080642.1, ENSMMUT00000080931.1
      Conserved Domains (3) summary
      cd00086
      Location:906 → 974
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00020
      Location:268 → 290
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:990 → 1080
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    Nucleotide Protein
    Heading Accession and Version

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