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    SCAF11 SR-related CTD associated factor 11 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701894, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SCAF11provided by VGNC
    Official Full Name
    SR-related CTD associated factor 11provided by VGNC
    Primary source
    VGNC:VGNC:77002
    See related
    Ensembl:ENSMMUG00000023791
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SFRS2IP; SRSF2IP
    Orthologs
    human mouse all
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    Genomic context

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    See SCAF11 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (45429110..45506471, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (44057320..44135755, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 2 Neighboring gene small nucleolar RNA SNORA64/SNORA10 family Neighboring gene lysine-rich nucleolar protein 1 pseudogene Neighboring gene uncharacterized LOC107000840 Neighboring gene 60S ribosomal protein L13a pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SCAF11
    Names
    serine/arginine-rich splicing factor 2, interacting protein
    splicing factor, arginine/serine-rich 2, interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      45429110..45506471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028829420.1 → XP_028685253.1  protein SCAF11 isoform X2

      UniProtKB/TrEMBL
      F7HT89
      Conserved Domains (2) summary
      PRK12678
      Location:830 → 1066
      PRK12678; transcription termination factor Rho; Provisional
      cd16636
      Location:96 → 138
      mRING-HC-C3HC3D_SCAF11; Modified RING finger, HC subclass (C3HC3D-type), found in SR-related and CTD-associated factor 11 (SCAF11) and similar proteins

    2. XM_028829419.1 → XP_028685252.1  protein SCAF11 isoform X1

      UniProtKB/TrEMBL
      F7HT89, H9G1R3
      Related
      ENSMMUP00000031334.4, ENSMMUT00000033479.4
      Conserved Domains (2) summary
      PRK12678
      Location:774 → 1010
      PRK12678; transcription termination factor Rho; Provisional
      cd16636
      Location:40 → 82
      mRING-HC-C3HC3D_SCAF11; Modified RING finger, HC subclass (C3HC3D-type), found in SR-related and CTD-associated factor 11 (SCAF11) and similar proteins

    3. XM_015151524.2 → XP_015007010.2  protein SCAF11 isoform X1

      UniProtKB/TrEMBL
      F7HT89, H9G1R3
      Related
      ENSMMUP00000068723.1, ENSMMUT00000086692.1
      Conserved Domains (2) summary
      PRK12678
      Location:774 → 1010
      PRK12678; transcription termination factor Rho; Provisional
      cd16636
      Location:40 → 82
      mRING-HC-C3HC3D_SCAF11; Modified RING finger, HC subclass (C3HC3D-type), found in SR-related and CTD-associated factor 11 (SCAF11) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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