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    PLXNB1 plexin B1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709802, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PLXNB1provided by VGNC
    Official Full Name
    plexin B1provided by VGNC
    Primary source
    VGNC:VGNC:76187
    See related
    Ensembl:ENSMMUG00000003074
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PLXNB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (104453430..104480737, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (94028490..94054897)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor Kazal type 8 (putative) Neighboring gene F-box and WD repeat domain containing 12 Neighboring gene coiled-coil domain containing 51 Neighboring gene translation machinery associated 7 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      104453430..104480737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015131006.2 → XP_014986492.2  plexin-B1

      UniProtKB/TrEMBL
      A0A1D5QMB8, G7MIQ5
      Conserved Domains (8) summary
      cd11275
      Location:28 → 480
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      smart00423
      Location:641 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      PHA03307
      Location:663 → 912
      PHA03307; transcriptional regulator ICP4; Provisional
      cd01179
      Location:1162 → 1249
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:1070 → 1161
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1252 → 1381
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:481 → 527
      PSI; Plexin repeat
      pfam08337
      Location:1567 → 2107
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain

    2. XM_015131009.2 → XP_014986495.2  plexin-B1

      UniProtKB/TrEMBL
      A0A1D5QMB8, G7MIQ5
      Conserved Domains (8) summary
      cd11275
      Location:28 → 480
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      smart00423
      Location:641 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      PHA03307
      Location:663 → 912
      PHA03307; transcriptional regulator ICP4; Provisional
      cd01179
      Location:1162 → 1249
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:1070 → 1161
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1252 → 1381
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:481 → 527
      PSI; Plexin repeat
      pfam08337
      Location:1567 → 2107
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain

    3. XM_015131007.2 → XP_014986493.2  plexin-B1

      UniProtKB/TrEMBL
      A0A1D5QMB8, G7MIQ5
      Conserved Domains (8) summary
      cd11275
      Location:28 → 480
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      smart00423
      Location:641 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      PHA03307
      Location:663 → 912
      PHA03307; transcriptional regulator ICP4; Provisional
      cd01179
      Location:1162 → 1249
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:1070 → 1161
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1252 → 1381
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:481 → 527
      PSI; Plexin repeat
      pfam08337
      Location:1567 → 2107
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain

    4. XM_015131008.2 → XP_014986494.2  plexin-B1

      UniProtKB/TrEMBL
      A0A1D5QMB8, G7MIQ5
      Conserved Domains (8) summary
      cd11275
      Location:28 → 480
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      smart00423
      Location:641 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      PHA03307
      Location:663 → 912
      PHA03307; transcriptional regulator ICP4; Provisional
      cd01179
      Location:1162 → 1249
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:1070 → 1161
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1252 → 1381
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:481 → 527
      PSI; Plexin repeat
      pfam08337
      Location:1567 → 2107
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain

    5. XM_028844083.1 → XP_028699916.1  plexin-B1

      UniProtKB/TrEMBL
      A0A1D5QMB8, G7MIQ5
      Related
      ENSMMUP00000049193.2, ENSMMUT00000055752.2
      Conserved Domains (8) summary
      cd11275
      Location:28 → 480
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      smart00423
      Location:641 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      PHA03307
      Location:663 → 912
      PHA03307; transcriptional regulator ICP4; Provisional
      cd01179
      Location:1162 → 1249
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:1070 → 1161
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1252 → 1381
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:481 → 527
      PSI; Plexin repeat
      pfam08337
      Location:1567 → 2107
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    Nucleotide Protein
    Heading Accession and Version

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