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    UTP4 UTP4 small subunit processome component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705036, updated on 17-Aug-2024

    Summary

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    Official Symbol
    UTP4provided by VGNC
    Official Full Name
    UTP4 small subunit processome componentprovided by VGNC
    Primary source
    VGNC:VGNC:79204
    See related
    Ensembl:ENSMMUG00000022841
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    CIRH1A; cirhin
    Orthologs
    human mouse all
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    Genomic context

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    See UTP4 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (56383027..56421512)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (53559595..53598468)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 6 homolog Neighboring gene deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like Neighboring gene hyaluronan synthase 3 Neighboring gene DERPC proline and glycine rich nuclear protein Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene syntrophin beta 2 Neighboring gene vacuolar protein sorting 4 homolog A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of t-UTP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-associated protein 4 homolog
    Names
    cirrhosis, autosomal recessive 1A (cirhin)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      56383027..56421512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028840817.1 → XP_028696650.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5RGB9, G7NQL6, H9EV88
      Related
      ENSMMUP00000030083.4, ENSMMUT00000032154.4
      Conserved Domains (2) summary
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:16 → 306
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_028840816.1 → XP_028696649.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X2

      UniProtKB/TrEMBL
      F6UFB4, G7NQL6
      Related
      ENSMMUP00000030082.4, ENSMMUT00000032153.4
      Conserved Domains (3) summary
      COG2319
      Location:94 → 531
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:21 → 57
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:16 → 281
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_015126490.2 → XP_014981976.2  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5RGB9, G7NQL6, H9EV88
      Related
      ENSMMUP00000059363.2, ENSMMUT00000055428.2
      Conserved Domains (2) summary
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:16 → 306
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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