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    SPG11 SPG11 vesicle trafficking associated, spatacsin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712221, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SPG11provided by VGNC
    Official Full Name
    SPG11 vesicle trafficking associated, spatacsinprovided by VGNC
    Primary source
    VGNC:VGNC:77856
    See related
    Ensembl:ENSMMUG00000014291
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SPG11 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (21071262..21174080, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (20944283..21047589, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene CTD small phosphatase like 2 Neighboring gene heterogeneous nuclear ribonucleoprotein M pseudogene Neighboring gene uncharacterized LOC114679390 Neighboring gene eukaryotic translation initiation factor 3 subunit J Neighboring gene PAT1 homolog 2 Neighboring gene uncharacterized LOC114679391 Neighboring gene beta-2-microglobulin Neighboring gene tripartite motif containing 69

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in axo-dendritic transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon extension IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spatacsin
    Names
    SPG11, spatacsin vesicle trafficking associated
    spastic paraplegia 11 (autosomal recessive)
    spatacsin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      21071262..21174080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142126.2 → XP_014997612.2  spatacsin isoform X2

      UniProtKB/TrEMBL
      G7MX73
      Related
      ENSMMUP00000053774.2, ENSMMUT00000064583.2
      Conserved Domains (1) summary
      pfam14649
      Location:2058 → 2350
      Spatacsin_C; Spatacsin C-terminus

    2. XM_015142127.2 → XP_014997613.2  spatacsin isoform X4

      UniProtKB/TrEMBL
      G7MX73
      Conserved Domains (1) summary
      pfam14649
      Location:1932 → 2227
      Spatacsin_C; Spatacsin C-terminus

    3. XM_028850863.1 → XP_028706696.1  spatacsin isoform X3

      UniProtKB/TrEMBL
      G7MX73
      Conserved Domains (1) summary
      pfam14649
      Location:2069 → 2340
      Spatacsin_C; Spatacsin C-terminus

    4. XM_015142125.2 → XP_014997611.2  spatacsin isoform X1

      UniProtKB/TrEMBL
      G7MX73
      Related
      ENSMMUP00000018770.4, ENSMMUT00000020054.4
      Conserved Domains (1) summary
      pfam14649
      Location:2094 → 2386
      Spatacsin_C; Spatacsin C-terminus

    5. XM_028850864.1 → XP_028706697.1  spatacsin isoform X5

      UniProtKB/TrEMBL
      A0A1D5R3J9
      Related
      ENSMMUP00000054885.2, ENSMMUT00000054876.2
      Conserved Domains (1) summary
      pfam14649
      Location:1893 → 2185
      Spatacsin_C; Spatacsin C-terminus
    Nucleotide Protein
    Heading Accession and Version

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