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    TSEN54 tRNA splicing endonuclease subunit 54 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702604, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TSEN54provided by VGNC
    Official Full Name
    tRNA splicing endonuclease subunit 54provided by VGNC
    Primary source
    VGNC:VGNC:79666
    See related
    Ensembl:ENSMMUG00000022123
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TSEN54 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (71879719..71888980)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (69218667..69227942)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane protein 94 Neighboring gene CASK interacting protein 2 Neighboring gene LLGL scribble cell polarity complex component 2 Neighboring gene myosin XVB

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tRNA-type intron splice site recognition and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-intron endonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-splicing endonuclease subunit Sen54
    Names
    tRNA splicing endonuclease 54 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261548.2 → NP_001248477.1  tRNA-splicing endonuclease subunit Sen54

      See identical proteins and their annotated locations for NP_001248477.1

      Status: PROVISIONAL

      Source sequence(s)
      JU471460
      UniProtKB/TrEMBL
      G7NGP9, H9EWS1
      Related
      ENSMMUP00000029134.4, ENSMMUT00000031126.4
      Conserved Domains (1) summary
      pfam12928
      Location:63 → 130
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      71879719..71888980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015120322.2 → XP_014975808.1  tRNA-splicing endonuclease subunit Sen54 isoform X2

      Conserved Domains (1) summary
      pfam12928
      Location:122 → 189
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

    2. XM_028835530.1 → XP_028691363.1  tRNA-splicing endonuclease subunit Sen54 isoform X3

      UniProtKB/TrEMBL
      F7H5J0
      Conserved Domains (1) summary
      pfam12928
      Location:122 → 156
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

    3. XM_015120320.2 → XP_014975806.1  tRNA-splicing endonuclease subunit Sen54 isoform X1

      UniProtKB/TrEMBL
      F7H5J0
      Conserved Domains (1) summary
      pfam12928
      Location:122 → 189
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

    4. XM_028835531.1 → XP_028691364.1  tRNA-splicing endonuclease subunit Sen54 isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZSM2, F7H5J2
      Related
      ENSMMUP00000029133.3, ENSMMUT00000031125.3
      Conserved Domains (2) summary
      PRK09297
      Location:116 → 189
      PRK09297; tRNA-splicing endonuclease subunit alpha; Reviewed
      pfam12928
      Location:63 → 130
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

    RNA

    1. XR_003723510.1 RNA Sequence

    2. XR_003723512.1 RNA Sequence

    3. XR_003723511.1 RNA Sequence

      Related
      ENSMMUT00000080794.1
    Nucleotide Protein
    Heading Accession and Version

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