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    ZNF394 zinc finger protein 394 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718740, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZNF394provided by VGNC
    Official Full Name
    zinc finger protein 394provided by VGNC
    Primary source
    VGNC:VGNC:79163
    See related
    Ensembl:ENSMMUG00000020140
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF394 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (41599835..41615560, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (124928496..124941758, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene uncharacterized LOC106997571 Neighboring gene zinc finger protein 789 Neighboring gene uncharacterized LOC114676873 Neighboring gene zinc finger with KRAB and SCAN domains 5 Neighboring gene family with sequence similarity 200 member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 394

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      41599835..41615560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845559.1 → XP_028701392.1  zinc finger protein 394 isoform X2

      Conserved Domains (2) summary
      smart00431
      Location:91 → 201
      SCAN; leucine rich region
      cd07765
      Location:187 → 224
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_015134378.2 → XP_014989864.2  zinc finger protein 394 isoform X1

      Related
      ENSMMUP00000050199.2, ENSMMUT00000073249.2
      Conserved Domains (5) summary
      smart00431
      Location:91 → 201
      SCAN; leucine rich region
      COG5048
      Location:267 → 545
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:501 → 521
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:542 → 566
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:187 → 248
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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