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    EFTUD2 elongation factor Tu GTP binding domain containing 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715512, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EFTUD2provided by VGNC
    Official Full Name
    elongation factor Tu GTP binding domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:72149
    Locus tag
    EGK_08817
    See related
    Ensembl:ENSMMUG00000013118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See EFTUD2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (56119603..56163324, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (50740759..50784443, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene gap junction protein gamma 1 Neighboring gene HIG1 hypoxia inducible domain family member 1B Neighboring gene coiled-coil domain containing 103 Neighboring gene family with sequence similarity 187 member A Neighboring gene glial fibrillary acidic protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U5 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    116 kDa U5 small nuclear ribonucleoprotein component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      56119603..56163324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119885.2 → XP_014975371.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

      UniProtKB/TrEMBL
      A0A663DIA2, A0A8J8XIA2, F6ZMM3, G7NIZ0
      Related
      ENSMMUP00000017238.3, ENSMMUT00000018410.4
      Conserved Domains (2) summary
      cl30786
      Location:122 → 954
      FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
      pfam16004
      Location:4 → 110
      EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

    2. XM_001114964.4 → XP_001114964.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X2

      See identical proteins and their annotated locations for XP_001114964.1

      UniProtKB/TrEMBL
      A0A1D5R732
      Related
      ENSMMUP00000056120.2, ENSMMUT00000075390.2
      Conserved Domains (2) summary
      cl30786
      Location:87 → 919
      FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
      pfam16004
      Location:19 → 75
      EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

    3. XM_015119887.2 → XP_014975373.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

      UniProtKB/TrEMBL
      A0A663DIA2, A0A8J8XIA2, F6ZMM3, G7NIZ0
      Conserved Domains (2) summary
      cl30786
      Location:122 → 954
      FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
      pfam16004
      Location:4 → 110
      EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

    4. XM_015119888.2 → XP_014975374.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

      UniProtKB/TrEMBL
      A0A663DIA2, A0A8J8XIA2, F6ZMM3, G7NIZ0
      Conserved Domains (2) summary
      cl30786
      Location:122 → 954
      FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
      pfam16004
      Location:4 → 110
      EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

    5. XM_028836603.1 → XP_028692436.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X3

      Conserved Domains (2) summary
      pfam16004
      Location:4 → 110
      EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
      cl30786
      Location:122 → 782
      FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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