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    SDS serine dehydratase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713285, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SDSprovided by VGNC
    Official Full Name
    serine dehydrataseprovided by VGNC
    Primary source
    VGNC:VGNC:77148
    See related
    Ensembl:ENSMMUG00000004208
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SDS in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (113103039..113114335, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (113422302..113433656, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 8 member B1 Neighboring gene phospholipase B domain containing 2 Neighboring gene serine dehydratase like Neighboring gene uncharacterized LOC114670955 Neighboring gene LIM homeobox 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-serine ammonia-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables threonine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-serine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in threonine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-serine dehydratase/L-threonine deaminase
    NP_001181451.1
    XP_015008329.1
    XP_015008330.1
    XP_028684808.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194522.2 → NP_001181451.1  L-serine dehydratase/L-threonine deaminase

      See identical proteins and their annotated locations for NP_001181451.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000060
      UniProtKB/TrEMBL
      F6Z3Z0
      Related
      ENSMMUP00000005627.2, ENSMMUT00000005976.4
      Conserved Domains (2) summary
      cd06448
      Location:11 → 320
      L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
      pfam00291
      Location:5 → 304
      PALP; Pyridoxal-phosphate dependent enzyme

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      113103039..113114335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028828975.1 → XP_028684808.1  L-serine dehydratase/L-threonine deaminase isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZQL9
      Related
      ENSMMUP00000066938.1, ENSMMUT00000088634.1
      Conserved Domains (1) summary
      cd06448
      Location:15 → 324
      L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.

    2. XM_015152844.2 → XP_015008330.1  L-serine dehydratase/L-threonine deaminase isoform X3

      Conserved Domains (2) summary
      cd06448
      Location:14 → 323
      L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
      pfam00291
      Location:8 → 307
      PALP; Pyridoxal-phosphate dependent enzyme

    3. XM_015152843.2 → XP_015008329.1  L-serine dehydratase/L-threonine deaminase isoform X1

      UniProtKB/TrEMBL
      A0A1D5RES6
      Related
      ENSMMUP00000058819.2, ENSMMUT00000073805.2
      Conserved Domains (2) summary
      cd06448
      Location:27 → 336
      L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
      pfam00291
      Location:21 → 320
      PALP; Pyridoxal-phosphate dependent enzyme
    Nucleotide Protein
    Heading Accession and Version

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