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    TAF5L TATA-box binding protein associated factor 5 like [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693770, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TAF5Lprovided by VGNC
    Official Full Name
    TATA-box binding protein associated factor 5 likeprovided by VGNC
    Primary source
    VGNC:VGNC:78148
    See related
    Ensembl:ENSMMUG00000009508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TAF5L in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (19377864..19411360)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (205754318..205787598, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene putative monooxygenase p33MONOX pseudogene Neighboring gene URB2 ribosome biogenesis homolog Neighboring gene ATP binding cassette subfamily B member 10 Neighboring gene U4 spliceosomal RNA Neighboring gene nucleoporin 133

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
    Names
    TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257498.1 → NP_001244427.1  TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L

      See identical proteins and their annotated locations for NP_001244427.1

      Status: PROVISIONAL

      Source sequence(s)
      JU333995
      UniProtKB/TrEMBL
      A0A5F7ZJ99, F6YMW6
      Related
      ENSMMUP00000061444.1, ENSMMUT00000109656.1
      Conserved Domains (3) summary
      cd08044
      Location:67 → 201
      TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
      cd00200
      Location:276 → 581
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:273 → 340
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      19377864..19411360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125737.2 → XP_014981223.1  TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X3

      Conserved Domains (2) summary
      cd08044
      Location:67 → 201
      TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
      sd00039
      Location:272 → 304
      7WD40; WD40 repeat [structural motif]

    2. XM_015125718.2 → XP_014981204.1  TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZJ99, F6YMW6
      Related
      ENSMMUP00000078072.1, ENSMMUT00000102622.1
      Conserved Domains (3) summary
      cd08044
      Location:67 → 201
      TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
      cd00200
      Location:276 → 581
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:273 → 340
      7WD40; WD40 repeat [structural motif]

    3. XM_015125727.2 → XP_014981213.1  TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZJ99
      Conserved Domains (3) summary
      cd08044
      Location:2 → 109
      TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
      cd00200
      Location:184 → 489
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:181 → 248
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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