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    TLCD3B TLC domain containing 3B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708210, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TLCD3Bprovided by VGNC
    Official Full Name
    TLC domain containing 3Bprovided by VGNC
    Primary source
    VGNC:VGNC:99613
    See related
    Ensembl:ENSMMUG00000037707
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    FAM57B
    Orthologs
    human mouse all
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    Genomic context

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    See TLCD3B in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (27326931..27339522)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (37857877..37870266, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 4 catalytic subunit Neighboring gene uncharacterized LOC114674356 Neighboring gene aldolase, fructose-bisphosphate A Neighboring gene uncharacterized LOC114674468 Neighboring gene chromosome 6 C16orf92 homolog Neighboring gene double C2 domain alpha Neighboring gene INO80 complex subunit E Neighboring gene HIRA interacting protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingosine N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ceramide synthase; protein FAM57B
    Names
    TLC domain ceramide synthase 3B
    family with sequence similarity 57 member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261178.1 → NP_001248107.1  ceramide synthase

      See identical proteins and their annotated locations for NP_001248107.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336630
      UniProtKB/TrEMBL
      F6V894, G7NQJ3
      Related
      ENSMMUP00000066756.1, ENSMMUT00000085272.1
      Conserved Domains (1) summary
      smart00724
      Location:40 → 261
      TLC; TRAM, LAG1 and CLN8 homology domains

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      27326931..27339522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139856.2 → XP_014995342.1  protein FAM57B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZC11
      Related
      ENSMMUP00000062140.1, ENSMMUT00000096365.1
      Conserved Domains (1) summary
      smart00724
      Location:126 → 347
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_015139858.2 → XP_014995344.1  protein FAM57B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZC11
      Conserved Domains (1) summary
      smart00724
      Location:40 → 261
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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